CEA, LITEN,
Laboratoire des systèmes solaires (L2S).
50 av. du Lac Léman,
73375 LE BOURGET DU LAC - CEDEX

 

Collaborations    
List of publications (pdf version)
without abstract (18 Ko)
List of publications (pdf version)
with abstract (83 Ko)

Publications


International journals articles
10 Lespinats, S. and Fertil, B. (2011) "ColorPhylo: A colour code to accurately display taxonomic classificationsEvolutionary bioinformatics (in press).
9 Lespinats, S. and Aupetit, M. (2011) “CheckViz: Sanity Check and Topological Clues for Linear and Non-Linear Mappings.Computer Graphics forum, 30(1), pp 113-125.
8 Lespinats, S., Grando, D., Maréchal, E., Hakimi, M.A., Tenaillon, O., and Bastien, O. (2011) “How phylogenetic inference methods can benefit from Multi Dimensional Scaling evolution.Evolutionary bioinformatics, 7, pp 61-85.
7 Deback, C., Luyt, C.E., Lespinats, S., Depienne, C., Boutolleau, D., Chastre, J., and Agut, H. (2010) “Microsatellite analysis of HSV-1 Isolates: from Oropharynx Reactivation toward Lung Infection in Patients Undergoing Mechanical Ventilation.” Journal of Clinical Virology, 47(4), pp 313-320.
6 Levert, M., Zamfir, O., Clermont, O., Bouvet, O., Lespinats, S., Hipeaux, M.C., Branger, C., Picard, B., Saint Ruff, C., Balliau, T., Zivy, M., Le Nagard, H., Cruvellier, S., Chane-Woon-Ming, B., Phan, K., Ferenci, T., Tenaillon, O. and Denamur, E. (2010) “Molecular and evolutionary bases of within-patient genotypic and phenotypic diversity in Escherichia coli extraintestinal infections.”  PLoS Pathogenes 6(9).
5 Lespinats, S., Fertil, B., Villemain, P. and Hérault, J. (2009) "RankVisu: mapping from neighbourhood network.Neurocomputing, 72(13-15), pp 2964-2978.
4 Lespinats, S., Verleysen, M., Giron, A. and Fertil, B. (2007) “DD-HDS: a tool for visualization and exploration of highdimensional data.” IEEE transactions on Neural Networks, 18(5), pp 1265-1279.
3 Fertil, B., Massin, M., Lespinats, S., Devic, C., Dumee, P. and Giron, A. (2005) “GENSTYLE: exploration and analysis of DNA sequences with genomic signature.” Nucleic Acids Res, 2005 Jul 1;33 (Web Server issue):ws12-15.
2 Dufraigne, C., Fertil, B., Lespinats, S., Giron, A. and Deschavanne, P. (2005) “Detection and characterization of horizontal transfers in prokaryotes using genomic signature.” Nucleic Acids Res, 2005 Jan 13, 33(1):e6.
1 Bastien, O., Lespinats, S., Roy, S., Metayer, K., Fertil, B., Codani, J.J. and Marechal, E. (2004) “Analysis of the compositional biases in Plasmodium falciparum genome and proteome using Arabidopsis thaliana as a reference.” Gene, 2004 Jul 21, 336(2):163-173.

National journals articles
3 Müller, N.S., Lespinats, S., Ritschard, G. and  Studer M. (2008) Visualisation et classification des parcours de vie.” Revue des Nouvelles Technologies de l'Information, E-11 (vol. II), 499-510.
2 Lespinats, S., Giron, A., Deschavanne, P. and Fertil, B. (2004) “Comparaison des coronavirus par signature génomique : application à l'analyse du SARS.” Virologie, apr 2004, 33.
1 Lespinats, S., Deschavanne, P., Giron, A. and Fertil, B. (2003) “L'ADN en tant que texte : style et syntaxe.” Revue des Nouvelles Technologies de l'Information, 2003 jun, 1, 193-202.

Oral communications in internationales conferences
8 Lespinats, S. and Aupetit, M. (2011) “CheckViz: Sanity Check and Topological Clues for Linear and Non-Linear Mappings.” Eurographics 2011, avril 2011, Llandudno, united Kingdom.
7 Lespinats, S., and Aupetit M. “Mapping without visualizing local default is nonsense.” 18th European Symposium on Artificial Neural Networks, ESANN 2010, april 2010, Bruges, Belgium.
6 Lespinats, S., Meyer-Baese, A., Steinbruecker, F., and Schlossbauer, T. “Evaluation and Visual Exploratory Analysis of DCE-MRI Data of Breast Lesions Based on Morphological Features and Novel Dimension Reduction Methods.” International Joint Conference on Neural Networks, IJCNN2009., june 2009, Atlanta, USA.
5 Lespinats, S., Meyer-Bäse, A., He, H., Marshall, A.G., Conrad, C.A. and Emmett, M.R. "Novel insights into the lipidome of glioblastoma cells based on a combined PLSR and DD-HDS computational analysis." Proceedings of Society of Photo-Optical Instrumentation Engineers Conference Series, SPIE 2009, Vol. 7347, April 2009, Orlando, USA.
4 Meyer-Baese, A., Lespinats, S., Steinbrüecker, F., Saalbach, A., Schlossbauer, T. and Barbu, A. “Visual exploratory analysis of DCE-MRI data in breast cancer based on novel nonlinear dimensional data reduction techniques.” Proceedings of Society of Photo-Optical Instrumentation Engineers Conference Series, SPIE 2009, Vol. 7343, April 2009, Orlando, USA.
3 Lespinats, S.,and Aupetit, M. “False neighbourhoods and tears are the main mapping defaults. How to avoid it? How to exhibit remaining ones?” Quality issues, measures of interestingness and evaluation of data mining models, QIMIE 2009, april 2009, Bangkok, Thaïlande.
2 Lespinats, S., Grando, D., Sautel, C.F., Hakimi, M.A. and Bastien, O. (2007) “Pointing out complex phylogenic relationships from apicomplexan methytransferase data by Multi Dimensional Scaling.1er Congrès de la Fédération Réaumur du Vivant,  2007 october, Grenoble, France.
1
Lespinats, S., Giron, A. and Fertil, B. (2005) “Visualisation and exploration of high-dimensional data using a "force directed placement" method: application to the analysis of genomic signature.International Symposium on Applied Stochastic Models and Data Analysis, ASMDA 2005, 2005 may, pp. 230-237.

Oral communications in nationales conferences
7 Müller, N.S., Lespinats, S., Ritschard, G. and  Studer M. (2008) “Visualisation et classification des parcours de vie.” 8èmes journées francophones Extraction et Gestion des Connaissances, EGC 20082008 jan. Nice, France.
6 Lespinats, S., Fertil, B. and Hérault, J. (2007), "Visualisation de clusters dans les espaces de grande dimension." 14èmes Rencontres de la Société Francophone de classification, SFC07, 2007 sep.
5 Lespinats, S. (2007) "Visualisation de données: présentation de DD-HDS et RankVisu." Séminaire du Groupe de Travail sur la Fouille de Données Complexes, GTFDC 2007, 2007 jun.
4 Lespinats, S., Guérin, A. and Héraultl, J. (2006) “RankVisu : une représentation de données à partir du réseau de voisinage.Journées PaRI-STIC 2006, 2006 nov.
3 Lespinats, S., Giron, A. and Fertil, B. (2005) “Compression et classification de données de grande dimension.12èmes Rencontres de la Société Francophone de classification, SFC05, 2005 jun.
2 Lespinats, S., Deschavanne, P., Chapus, C., Giron, A. and Fertil, B. (2004) “Pertinence des métriques fractionnaires pour l'analyse des données de grande dimension (signatures génomiques).Premier atelier sur la fouille de données complexes dans un processus d'extraction des connaissances, EGC 2004, 2004 jan, pp. 135-142.
1 Lespinats, S., Deschavanne, P., Giron, A. and Fertil, B. (2003) “L'ADN en tant que texte : style et syntaxe.PROC 35ème Journées De Statistiques, JDS03, 2003 jun, pp. 651-654.

Pattents
7 Lespinats, S., Aupetit, M. “Méthode pour évaluer la classe d'une données test dans un espace de données de grande dimension.” (submitted to French pattent agency INPI in october 2009).
6 Aupetit, M., Lespinats, S. “Méthode pour évaluer la ressemblance d'un objet requête à des objets de réference.” (submitted to French pattent agency INPI in october 2009).

Poster
6 Lespinats, S., Cugnet, F., Guillou, H. and Le Pivert X. (2011) "How Much PV Energy Will I Produce Tomorrow? A Forecasting Tool Which Fits the Future Conditions on the French Electricity Market", 26th European Photovoltaic Solar Energy Conference and Exhibition, PV SEC, 6CV.1.35. 2011 sept.
5 Devic, C., Lespinats, S., Giron, A. and Fertil, B. (2006) “Détection et segmentation des zones atypiques du génome.7èmes Journées Ouvertes Biologie Informatique Mathématiques, JOBIM 2006, 2006 jul.
4 Lespinats, S., Devic, C., Massin, M., Dumee, P., Giron, A. and Fertil, B. (2005) “Un exemple d'utilisation de GENSTYLE : Etude de la signature génomique du SARS.6èmes Journées Ouvertes Biologie Informatique Mathématiques, JOBIM 2005, 2005 jun.
3 Lespinats, S., Deschavanne, P., Giron, A. and Fertil, B. (2004) “Propriétés de la signature génomique mises en valeur à l'aide de métriques fractionnaires.5èmes Journées Ouvertes Biologie Informatique Mathématiques, JOBIM 2004, 2004 jun. JO-34.
2 Lespinats, S., Deschavanne, P., Giron, A. and Fertil, B. (2003) “DNA sequences share a common syntax.European Conference on Computational Biology, ECCB 2003, 2003 sep, pp. 533-534.
1 Lespinats, S., Giron, A., Deschavanne, P. and Fertil, B. (2003) “Genomic Signature : Deciphering the style of DNA.Journées de Post Génomique de la DOUA, JPDG03, 2003 may.

Academic documents
2 Lespinats, S. (2006) "Style du génome exploré par analyse textuelle de l’ADN." Ph.D. thesis (biomathematic)
1 Lespinats, S. (2002) "Signature génomique: Recherche de séquences d’intérêt biologique dans le génome." master thesis (biomathematic)